'tRNA-ser(UCN)' mutations and comparisons

The transfer RNA for serine (UCN) is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 7446 - 7514. (All numbering is from CRS.)


Complemented      GAAAAAG T CATG GAGGC CATG GG GTTGG CTTGAAA CCAGC TTTG GGGGG     TTCGATT CCTTC CTTTTTT G

                  7446            7459                         7480                  7498
Homo sapiens      C AAAAAAG GAAGG AATCGAA     CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
Pan paniscus      c aaaaaag gaagg aatcgaa     ccccc taaa gctgg tttcaag ccaac cc catg acccc catg a ctttttc
Pan troglodytes   c aaaaaag gaagg aatcgaa     ccccc taaa gctgg tttcaag ccaac cc catg acctc catg a ctttttc
Gorilla gorilla   c aaaaaag gaagg aatcgaa     ccccc caaa gctgg tttcaag ccaac cc catg acctt catg a ctttttc
Pongo pygmaeus    c aaaaaag gaagg aatcgaa     cctcc taaa gctgg tttcaag ccaac cc cata acccc catg a ctttttc
Pongo abelii      c aaaaaag gaagg aatcgaa     cctcc taaa gctgg tttcaag ccaac cc caca acctc catg a ctttttc
Hylobates lar     c aaaaaag gaagg aatcgaa     ccccc taaa actgg tttcaag ccagc cc cata acctc tatg a ctttttc
Macaca Sylvanus   c gaaaaag gagag agtcgaa     ccccc taga actgg tttcaag ccagt ct tata accct tata a ctttttc
Macaca Mulatta    c gaaaaag gaggg agtcgaa     ccccc taaa actgg tttcaag ccaat ct tata gcccc tata a ctttttc
Papio hamadryas   c gaaaaag gaggg agtcgaa     ccccc taaa actgg tttcaag ccagc ct tata gcccc tata a ctttttc
Cercopithicus     c gaaaaag gaggg agtcgaa     ccccc taaa accgg tttcaag ccaat cc tata gcccc tata a ctttttc
Colobus Guereza   t aaaaaag gaagg aatcgaa     ccttc tgaa gctgg tttcaag ccagc tc tata gcctc tata a ctttttc
Trachypithecus    t aaaaaag gaagg aatcgaa     cctcc tgaa actgg tttcaag ccaat tc tata tcctc tata a ctttttc
Cebus albifrons   c gaaaaag gaagg atttgaa     ccccc aaaa attgg tttcaag ccaat cc cata gaccc tatg a ctttttc
Nycticebus        c aagaaag ggagg aatcgaa     ccccc taaa attgg tttcaag ccaac cc cata accc  catg a ctttctt
Lemur Catta       c aagaaag gaagg aatcgaa     ccctc taaa attgg tttcaag ccaac cg cgta accac taca a ctttctt
Tarsius           c aagaaag gaagg aattgaa     ccccc taag attgg tttcaag ccaac ct cata accac tatg t ctttctt
Tupaia            c aagaaag gaagg aatcgaa     ccccc aaaa atcgg tttcaag ccaac tt cgta acctc tacg a ctttctt
Cynocephalus      c gagaaag gaagg agttgaa     ccctc caaa gatgg tttcaag ccaac cc cata gcccc tatg a ctttccc


rhino
Black rhino (14)  t aagaaag gaagg aattgaa     ccccc tcta actgg tttcaag ccaat at cata acctc tatg t ctttctc :tctcccaataaat:
White rhino  (Y)  t aagaaag gaagg aatcgaa     ccccc tcta actgg tttcaag ccaat at cata gcctt tatg t ctttctc :tctcaataagt:
India rhino  (X)  t aagaaag gaagg aatcgaa     ccccc tcta actgg tttcaag ccaat at cata gcctt tatg t ctttctc :tctcaataagt:
Javan rhino (15)  t aagaaag gaagg aatcgaa     ccccc tctg actgg tttcaag ccaat at cata acctc tatg t ctttctc :aataagt:
Woolly rhino(13)  t aagagag gaagg agtcgaa     ccttc ttta attgg tttcaag ccaat at cata gcccc tatg t ctctctc :aataaat:
Sumatran rh.(16)  t aagagag gaagg aatcgaa     cctcc ttta attgg tttcaag ccaat at cata acctc tatg t ctctctc :aataaac:
Tapirus           t aaataag aaagg aaggaatcgaa ccccc tctg actgg tttcaag ccaat at cata accat tatg t ctttctc :aaaatac:
Equus             t aagaaag gaagg aatcgaa     ccccc tcta actgg tttcaag ccaat at cata accac tatg t ctttctc :catcaatt:
Hippopotamus      c aagagag gaagg aatcgaa     cctcc tcct gttgg tttcaag ccaac at cata accac tatg t ctctctc :cataaac:
 
................

Human NUMT sequences:-

Homo sapiens     C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC

NT_004350.18|Hs1_4507   chromosome  1    46629-46697
                 C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
NT_019273.18|Hs1_19429  chromosome  1  3254772-3254708
                      AAAG GAAGG AATTGAA  CCTCC AGAA ACTGG TTTCAAG CCAAT CC CATA ACCTG TATG A GTCTCTC
NT_032977.8|Hs1_33153   chromosome  1 25811097-25811030
                   GAGAAAG GAAGG AATTGAA  CCTCC CAAA ACTGG GTTTAAG CCAAC TT CGTA ACTAC GATG A CTTTCTC
NT_032977.8|Hs1_33153   chromosome  1 64365187-64365121
                 T AAGAAAG GGAGG AATCAAA  TCAC. .ATA ACCAA TTTCAAG CCAGA CC CATA ACCAC TA.. G CTTTCTC
NT_005403.16|Hs2_5560   chromosome  2  52623628-52623686
                 T AAGAAAG CAAGG AGTCAA   ACCCC CTAT AACTG GTTTCAG GCTAG CT TCAT AACCA TTA  
NT_022135.15|Hs2_22291  chromosome  2 19740948-19740997
                    AAAAAG GAGGG AATCGAA  CCCCC CACA GACTGG TTTCAAG CCAAT CC CAT
NT_022135.15|Hs2_22291  chromosome  2 20848131-20848082
                    AAAAAG GAGGG AATCGAA  CCCCC CAGA GACTGG TTTCAAG CCAAT CC CAT
NT_005612.15|Hs3_5769   chromosome  3 26936311-26936379
                 C GAAAAAG GAAGG AATCCAA  CCCCC TAAA ACTGG TTTCAAG CCAAC CT CATA ACCTC TATG A CTTTTTC
NT_005612.15|Hs3_5769   chromosome  3 59871922-59871864
                            AAGG AATTGAA  CCCCC AAAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CTTTTT
NT_022459.14|Hs3_22615  chromosome  3 23344715-23344647
                 C GAGAAAG GAAGG AATTGAA  TCCCC AGAA ACTGG TTTCAAG ACAAT CC CATA ACCTC TATG A CTTTCTC
NT_022517.17|Hs3_22673  chromosome  3 12146472-12146416
                        AG GAAGA AACTGAA  CCTCA TATA ATTGG TTTCAAG CCAGT CC CATA ACCTC TATG A C
NT_016354.18|Hs4_16510  chromosome  4  80929001-80928934
                 T GAGAAAG GAAGG AATCAAA  ACTCC AGAA ACTGG TTTCAAG CCAGT CA GATA ACC.C CACG A CTCTCTC
NT_006576.15|Hs5_6733   chromosome  5  5386586-5386524
                    AAAAAG GAAGG AATTGAA  CCCCC AAAG ACTGG TTTCAAG CCAAT CC CATA ACCTC CATG A CTT
NT_034772.5|Hs5_34934   chromosome  5   160954-160895
                      AAAG GAAAG ACTCGAA  CCCCC AGAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CT
NT_034772.5|Hs5_34934   chromosome  5  1804394-1804328
                    AAAAAG GAAGG AATGAAA  CCTCC TAAA GCTGG TTTCAAG CCAAC CC CACA GCCTC TATG A CTTTTTC
NT_025741.14|Hs6_25897  chromosome  6 58091131-58091198
                 G GAGGAAG GAAGG AATTGAA  CCCC. AAAA ACTGG TTTCAAG CCAAT CT CATA ACTTC TATG A CTTTTTC
NT_007758.11|Hs7_7915   chromosome  7  6830152-6830089
                       AAG GAAGG AATCGAA  CTCCC AGAG ACTGG TTTCAAG CCAAT CC CATA ACTTC TATG A CTTTCTC
NT_007758.11|Hs7_7915   chromosome  7  5596093-5596156
                       AAG GAAAG AATGGAA  CCTCC AGAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CCTTCTC
NT_007758.11|Hs7_7915   chromosome 7  1601841-1601774
                 C GAAAAAG GAAGG AATCGAA  CCTCC AGAG ACTGT TTCAAGT CAATC CC ATAA CCTC  TATG A CTTTCTC
NT_023629.12|Hs7_23785  chromosome  7   255675-255727
                       AAG GAAGG AATAGAA  CCTCC ACAG ACTG. TTTCAAG CCAAT CC CATA ACCTC TA  
NT_008046.15|Hs8_8203   chromosome  8  17321525-17321587
                      GAAG GAAGG AAACGTA  CTTC. TTA. ACTGG TTTCAAG CCGAT TT CATC ACAAT TATG A CTTTTTC
NT_008413.17|Hs9_8570   chromosome  9  5088208-5088269
                       AAG AAAGG AATTAA.  CTTCC AGAA ACTGG TTTCAAG CCAAT C. AAAA ACCTC TGTG A CTTTCTC  
NT_008583.16|Hs10_8740  chromosome 10 19902310-19902245
                  A GAAAGG AAGGA ATCAAA   CCCCC AAA. ACTGG TTTCAAG CCACC TT TATA ACCTC TATG A CTTTCTC  
NT_033899.7|Hs11_34054  chromosome 11   6837449-6837401
                    AAAAAG GAAGG AATCGAA  CCTCC TGAA ACTGG TTTCTAG CCAAT CC CAT
NT_009237.17|Hs11_9394  chromosome 11 38575674-38575733
                      AAAG GAAGG AATCAAA  CCTCC AGAA ACTGG TTTCAAG CCAAT CC CATA CCCTC TATG A CT
NT_009952.14|Hs13_10109 chromosome 13 10439614-10439657
                                                AAAA ACTGG TTTCAAG CCAAT CT GATA ACCTC TATG A CTTTTTC
NT_037887.4|Hs16_37891  chromosome 16  3357710-3357651
                           AAGGA ATTGAA   CCTCC AGAA ACTGA TTTCAAG CCAAT CC CATA ACCTG TATG A CTTTCTC  
NT_010783.14|Hs17_10940 chromosome 17  9837000-9837024
                 C AAAAAAG GAAGG AATCGAA  CCCCC  
NT_024862.13|Hs17_25018 chromosome 17   345097-345165
                 C AAAAAAG GAAGG AATTGAA  CCTCC TAAG GCTGG TTTCAAG CCAGC CT CATA ACCCC TATG A CTTTTTC
NT_011520.11|Hs22_11677 chromosome 22 15959352-15959420
                 C GAGAAAG GAAGG AATCAAA  CCTCC TAAA ACTGG TTCCAAA CGAGC TT CATA ATCAC TCTG A CTTTCTC
NT_011651.16|HsX_11808  chromosome  X 25348328-25348396
                 T AAAAAAG AAAGG AATCAAA  TCCCC TATT ACTGA TTTCAAG CCAGT CC CATA ACAAT TATG G CTTTCTC


Homo sapiens     C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC


...............
Pan troglodytes  c aaaaaag gaagg aatcgaa  ccccc taaa gctgg tttcaag ccaac cc catg acctc catg a ctttttc

NW_001228910.1|Ptr1_WGA119_2     Pan troglodytes chromosome  1 2056348-2056282
                 T AAGAAAG GGAGG AATCAAA  ATCAC ATAA CCAA. TTTCAAG CCAGA CC CATA ACCAC TAGG . CTTTCTC
NW_001232110.1|Ptr2B_WGA2667_2   Pan troglodytes chromosome 2B 33781133-33781201
                 C AAGAAAG GAAGG AATTGAA  CCTCC AGAA ATTGG TTTCAAG CCAAT CC CATA ACTTC TATG A CTCTCTT  
NW_001232828.1|Ptr3_WGA3385_2    Pan troglodytes chromosome  3  2792129-2792061
                 C GAGAAAG GAAGG AATTGAA  TCCCC ACAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CTTTCTC
NW_001232832.1|Ptr3_WGA3389_2    Pan troglodytes chromosome  3 22430727-22430795
                 C GAAAAAG GAAGG AATCCAA  CCCCC TAAA ACTGG TTTCAAG CCAAC CT CATA ACCTC TATG A CTTTTTC
NW_001232839.1|Ptr3_WGA3396_2    Pan troglodytes chromosome  3  8122629-8122570
                           AAGG AATTGAA   CCCCC AAAA ACTGG TTTCAAG CCAAT CC CATA ACCTC TATG A CTTTTTC  
NW_001236565.1|Ptr6_WGA7122_2    Pan troglodytes chromosome  6 3818594-3818661
                 G GAGAAAG GAAGG AATTGAA  CCCC. AAAA ACTGG TTTCAAG CCAAT CT CATA ACTTC TATG A CTTTTTC  
NW_001238034.1|Ptr7_WGA8591_2    Pan troglodytes chromosome  7  951570-951507
                       AAG GAAGG AATCGAA  CTCCC AGAG ACTGG TTTCAAG CCAAT CC CATA ACTTC TATG A CTTTCTC  
NW_001220694.1|Ptr10_WGA12258_2  Pan troglodytes chromosome 10 19763230-19763163
                 C GAGAAAG GAAGG AATCAAA  CCCCC AAA. ACTGG TTTCAAG CCACC TT TATA ACCTC TATG A CTTTCTC
chromosome 12 11655643-11655575
                 C AAAAAAG GAAGG AATCGAA  CCCCC TAAA GCTGG TTTCAAG CCAAC CC CATG ACCTC CATG A CTTTTTC  
NW_001230976.1|Ptr22_WGA20749_2  Pan troglodytes chromosome 22  6827486-6827554  
                 C GAGAAAG GAAGG AATCAAA  CCTTC TAAA ACTGG TTCCAAA CGAGC TT CATA ATCAC TCTG A CTTTCTC
...............

Macaca Mulatta   c gaaaaag gaggg agtcgaa  ccccc taaa actgg tttcaag ccaat ct tata gcccc tata a ctttttc

NW_001122912.1 Macaca                           chromosome  8  3216459-3216391
                 C GAAAAAG GAGAG AGTCGAA  CCCCC TAAA ACTGG TTTCAAG CCAAT CT TATA GCCCC TATA A CTTTTTC
NW_001124211.1|Mmu9_WGA14375_1  Macaca mulatta  chromosome  9  8048708-8048775
                 C GAGAAAG GAAGG AGTCAAA  CCCCC AAA. ACTGG TTTCAAG CCACC TT TATA ACTTC TATG A CTTTCTC  
NW_001095178.1|Mmu10_WGA15741_1  Macaca mulatta chromosome 10   505065-505133
                 C GAGAGAG GAAGG AATCAAA  CCTCC TAAA ACTGG TTCCAAA CCAGC TT CATA ATCAC TATG A CTTTCTC  
NW_001100386.1                  Macaca mulatta  chromosome 14  2735325-2735393
                 C GAAAAAG GAAGG AATCGAA  CCTCC TAAA ACTGG TTTCAAG CCAAC CC TATA ACCCC TATA T CTTTTTC  

...............

Bos taurus       T AAGAAAG GAAGG AATCGAA  CCCCC TACT ATTGG TTTCAAG CCAAC AT CATA ACCTC TATG T CTCTCTC

NW_001493748.1|Bt1_WGA132_3:647010-647079      Bos taurus chromosome  1
                 T AAGAAAG AAAGG AGTCAAAC CCCCC AACT ACTGG TTTCAAG CCAAC AT CATA GCCAT TACA T CTTTCTC
NW_001494558.1|Bt2_WGA206_3:21416-21484        Bos taurus chromosome  2
                 C CTAAAAG GAAGG AATCGAA  CCCCC TACT ATTGG TTTCAAG CCAAC AT CATA ACCAC TATG T CTCTCTC
NW_001494819.1|Bt3_WGA467_3:269283-269351      Bos taurus chromosome  3
                 T AAGAAAG GAAGG AATTGAA  CCCCG TACT ATTGG TTTCAAG CCAAC AT CATA ACCAC TATG T CTGTCTC
NW_001492779.1|Bt10_WGA1287_3:160783-160851    Bos taurus chromosome 10
                 T AAGAAAG TTATG TATCGAA  CCCCC TACT ACTGG TTTCATG TCTAC AT CATA ACCAC TATG T CTCTCTC
NW_001493305.1|Bt15_WGA1813_3:c137591-137523   Bos taurus chromosome 15
                 T AAGAAAG GAAGG AATTCAA  CCCTC TTCT ACTGG TTTCAAG CCAAC AT AACA ACCAT TATG T TTTTCTC
NW_001493932.1|Bt20_WGA2240_3:c1863462-1863390 Bos taurus chromosome 20
                 T AAAAAAG GAAGG AATTGAA  CCCTC TTTA ACTGG TTTCAAG CCAAT GC CATA ACCAC TATG T CTCTCTT
NW_001494078.1|Bt22_WGA2386_3:c354963-354895   Bos taurus chromosome 22
                 T AGGAAAG GAAGG AATCACA  CCCTC TTCT ACTGG TTTCAAG CAAAC AC CATA ATAAT TATG C ACTTCTC
NW_001494260.1|Bt24_WGA2568_3:1879755-1879823  Bos taurus chromosome 24
                 T AAGAAAG GAGTG AACCGAA  CCCTC TACT ACTGG TTTCAAG CCAAC AT CAAA GCTAC TATG T CTTTCTC

...............

Human Mutations found in published genealogical sequences:-
CRS              C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
                 7446      7454  7459     7466  7471 7475  7480    7487     7494 7498  7503   7508

G7457C
EF184609(S.Afr.) C AAAAAAG GAACG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
A7460G
KAsq0055(Japan)  C AAAAAAG GAAGG AGTCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC 
7465.C
AY738997(Italy)  C AAAAAAG GAAGG AATCGAAC CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
7471-
FJ383723(India)  C AAAAAAG GAAGG AATCGAA  CCCCC -AAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
7471.1C

A7472G
DQ246820(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CGAA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC 
A7472T

A7473G
DQ112830(Euro.)  C AAAAAAG GAAGG AATCGAA  CCCCC CAGA GCTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
C7476T
AY195778(Cauca.) C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GTTGG TTTCAAG CCAAC CC CATG GCCTC CATG A CTTTTTC
A7490G
AY714050(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAGC CC CATG GCCTC CATG A CTTTTTC
C7492T
AY714031(India)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC TC CATG GCCTC CATG A CTTTTTC
C7493T
DQ112961(Africa) C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CT CATG GCCTC CATG A CTTTTTC 
G7498A
AF381992(Maur.)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG ACCTC CATG A CTTTTTC 
T7501A
KAsq0058(Japan)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCAC CATG A CTTTTTC 
T7502-
AP008436(Japan)  C AAAAAAG GAAGG AATCGAA  CCCCC CAAA GCTGG TTTCAAG CCAAC CC CATG GCCT. CATG A CTTTTTC


The mutations are present in these haplogroups - only C7476T is common:

A7456G         -    1  - X2i
G7457C         -    1 - L0k1a
A7460G         -    1 - D4e2
7465.1C        -  5 -H13a1a2, I1a1a, I1b, L1c3a1, N9b2
7471.1C        -    1 - M11c
A7472G         -   15 - M2a1a1
A7472T         -    5 - H7g
A7473G         -    6 - HV12b1, L0d2c1, R1
C7476T         -  338 - J2(definer)
A7490T         -  R30b1(definer)
C7492T         -    4 - A5a1a1a,  N5, X2
C7493T         -  77 - A D2 L3
G7498A         -  61 - B2 L1c S4
T7501A         -  1 - D4j
T7502-         -  1 - B4e
T7510C         -  1 ( reported to be associated with deafness & ataxia) 
T7511C         -  1 - L2a1b1a (NSHL)




2009 & 2018