'tRNA-met' mutations and comparisons

The transfer RNA for methionine is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 4402 - 4469. (All numbering is from CRS.)

                 4402            4415               4430                      4451
Homo sapiens     AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT A
Pan paniscus     agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttatac  ccttc ccgtact a
Pan troglodytes  agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttacac  ccttc ccgtact a
Gorilla gorilla  agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg tcacat  ccttc ccgtact a
Pongo pygmaeus   agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttacac  ccttc ccgtact a
Pongo abelii     agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttatac  ccttc ccgtact a
Hylobates lar    agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttatac  ccttc ccgtact a
Macaca Sylvanus  agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tcacat  ccttc ccgtact a
Macaca Mulatta   agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tcacat  ccttc ccgtact a 
Papio hamadryas  agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tcacat  ccttc ccgtact a
Cercopithicus    agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg tcacac  ccttc ccgtact a
Colobus Guereza  agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttatac  ccttc ccgtact a
Trachypithecus   agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttatac  ccttc ccgtact a
Cebus albifrons  agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg tccaat  ccttc ccgtact a
Nycticebus       agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg tttatat ccttc ccgtact a
Lemur Catta      agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tttatat ccttc ccgtact a
Tarsius          agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gtcgg tttaaat ccttc ccgtact a
Tupaia           agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg tttatat ccttc ccgtact a
Cynocephalus     agtaagg tc agtt aagca agct a ttggg cccatac  cccga aaat gttgg ttcacat ccttc ccatact a

rhino
Black rhino (14) agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg attatac ccttc ccgtact a
White rhino  (Y) agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg attatac ccttc ccgtact a
India rhino  (X) agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg ataatac ccttc ccgtact a
Javan rhino (15) agtaagg tc agct aagca agct a tcggg cccatac  cccga aaat gttgg atcgtac ccttc ccgtact a
Woolly rhino(13) agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg attatac ccttc ccgtact a
Sumatran rh.(16) agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg attatac ccttc ccgtact a
Tapirus          agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg atcatac ccttc ccgtact a
Hippopotamus     agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tttaaac ccctc ccgtact a
Equus            agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg attacac ccttc ccgtact a

..................

Human NUMT sequences:-
NT_004350.18|Hs1_4507   chromosome  1    43584-43651
                 AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAT  CCTTC CCGTACT A
NT_004836.17|Hs1_4993   chromosome  1  2863649-2863582
                 AGTAAGG TC AGCT AAATA AGCT A TCAGG CCCATAC  CCCAA AACT GTTGG TTATAT  CCTTC CCGTACT A
NT_022135.15|Hs2_22291  chromosome  2  6490504-6490571
                 AGTAAGG TC ACCT AAATA AACC A TCAGA CCCATAC  CCTGA AAAT GTTGG TTACAC  CCTTC CCATACT A
NT_022135.15|Hs2_22291  chromosome  2 19737906-19737973
                 AGTAAGG TC AGCT AAATA AGCT A TCAGG CCCATAT  CCCAA AAAT GTTGG TTACAT  CCTTC CCATACT A  
NT_022135.15|Hs2_22291  chromosome  2 20851053-20850986
                 AGTAAGG TC AGCT AAATA AGCT G TCAGG CCCATAC  CCCAA AAAT GTTGG TTACAT  CCTTC CTGTACT A
NT_022135.15|Hs2_22291  chromosome  2 29685925-29685860
                 AGTAAGG TC AGCT A..TA AGCT A TCGGG CCCATAC  CCCAA AAAT GTTGG TTATAT  CCTTC CCGTACT A
NT_005612.15|Hs3_5769   chromosome  3 13116099-13116165
                   TAAGG TC AGCT AAACA AGCT A TTGGG CCCCTAC  CCCGA AAAT GTTGC TTTTTAT CCTTT CAGTACT A 
NT_022459.14|Hs3_22615  chromosome  3  2415112-2415139
                 AGTAAGG TC AGCT AAATA AGCT A TCGGG
NT_016354.18|Hs4_16510  chromosome  4 80932031-80931973
                   TAAGG TC AGCT AAATA AGCT A TTGGG CCCATAC  ACCAA AAAT GTTGG TTATAT  CCTTC C
NT_007299.12|Hs6_7456   chromosome  6 32977081-32977014
                 AGTAAGG TC AGCT AAATA AGCT A TTGGG TCCATAC  CCCAA AAAT ATTGG TTATAC  CCTTC CCGTACT A
NT_007758.11|Hs7_7915   chromosome  7  1604839-1604778
                 AGTAAGG TC AGCT AAATA AGCT A TCTGG CCCATAC  CCCAA AAAT GTTGG TTATAC  CCTTC CC
NT_007914.14|Hs7_8071   chromosome  7  2094905-2094854
                   TAAGG TC AGCT ATATA TGCT A TCGGG CCCACAC  TCCAA AAAT GTTGG TTATA
NT_023629.12|Hs7_23785  chromosome  7   252578-252644
                  GTAAGG TC AGCT AAATA AGCT A TCAGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTCCT A
NT_007995.14|Hs8_8152   chromosome  8  3193493-3193554  NC_000008.11   33015201-33015262
                 AGTAAGG TC AGCT AAATA AGCT G TTGGG CCCATAC  CCCAA AAAT GTTGG TTACAC  CCTTC CC
NT_008046.15|Hs8_8203   chromosome  8 17317441-17317483  
                 AGTAAGG TC AGCT AAATA AGCT A CCAGG CCCATAT  CCCCA AAA
NT_023678.15|Hs8_23834  chromosome  8   900698-900631
                 AGTAAGT TC AGCT AAATA AGCT A TCAGA CCCATAC  CCTGA AAAA ATTGG TTATAC  CCTTC CCTTACT A
NT_008413.17|Hs9_8570   chromosome  9  5085158-5085226
                 AGTAAGT TC AGCT AAATA AGCT A TTGGG CCCATTCT CCTGA AAAT GTTGG TTATAC  CCTTC CCATACT A
NT_023935.17|Hs9_24091  chromosome  9 10522260-10522193
                 AGTAAGG TC AGTT AAATA AGCT A ACGGG CCCATAC  CCCGA AAAT GTTAG TTACAC  CCTTC CTGTACT A
NT_008583.16|Hs10_8740  chromosome 10 19906256-19906188
                 AGTAAGG TC AGCT AAATA AGCT A TGGGG TCCATAC  CCCAA AAAT GCTGA TTTATAC CCTTT CTGTACT A
NT_008705.15|Hs10_8862  chromosome 10  2012011-2012075
                    AAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CTCAC AAAT GTAGG TTACAC  CCTTC CCGTACT A
NT_033899.7|Hs11_34054  chromosome 11  6840453-6840386
                 AGTAAGG TC AGAT AAATA AGCT A TCAGG CCCATAC  CCTGA AAAT GCTGG TTATCT  CCTTC CTGTACT A
NT_009755.18|Hs12_9912  chromosome 12  4478848-4478789
                   TAAGG TC GGCT AAATA AGCT A TCGAG CCCATAC  CCCGA AAAT GTTGG TTATAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4477895-4477849
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GTTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478036-4477990
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GTTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478083-4478037
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GTTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4477848-4477796
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CCATACT A
NT_009755.18|Hs12_9912  chromosome 12  4477989-4477943
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478130-4478084
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478177-4478131
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478224-4478178
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478271-4478225
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478318-4478272
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478365-4478319
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478412-4478366
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478459-4478413
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478506-4478460
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478553-4478507
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478600-4478554
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC  
NT_009755.18|Hs12_9912  chromosome 12  4478647-4478601
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478694-4478648
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4478788-4478742
                                   ATA AGCC A TCGAG CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12  4477942-4477896
                                   ATA AGCC A TCGAG TCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_009755.18|Hs12_9912  chromosome 12 4478729-4478695
                                                  G CCCATAC  CCCGA AAAT GCTGG TTACAT  CCTTC CC
NT_029419.11|Hs12_29578 chromosome 12 4236356-4236310
                     AGG TC AGCT AAATA AGCT A TAGGG TCCATAT CCCAA AAAT CTTGG TT
NT_037887.4|Hs16_37891  chromosome 16  3359752-3359745
                 AGTAAGG TT GGCT AACTA AGCT A TCGGG CTCATAC TCCAA AAAT GTTAG TTATAC  CCTTA CTGTACT A   
NT_010718.15|Hs17_10875 chromosome 17 19103876-19103934
                 AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCAA AAAT GTTGG TCATAC CCTT
NT_024862.13|Hs17_25018 chromosome 17   342075-342142
                 AGTAAGG TC AGCT AAATA AGCT A TCAGG CCCATAC CCAGA AAAT GTTGG TTATAT  CCTTC CCGTACT A
NT_011295.10|Hs19_11452 chromosome 19  3469764-3469718
                 AGTAGGG TA AGCT AAATA AGCT A CCCAG CCCATAC CTTGA AAAT GTT  
NT_011520.11|Hs22_11677 chromosome 22  3740212-3740279
                 AGTAAGG AC AGCT AAGTA AGCT A TTGGG CCCATAC  CCTGA AAAT GTTGG TTATAC  CCTTC CTATACT A
NT_011520.11|Hs22_11677 chromosome 22 15966133-15966200
                  GTAATG GC AGCT AAATA AGTT A TCAGG CCCATAC CCAAA ATAT GCTGG TTTATAC CCTTC CTGTACT A   
NT_011630.14|HsX_11787  chromosome  X  2760750-2760683
                 AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC TCCGA AAAT GTTGG TTACAC  CCTTC CCATACT A
NT_011651.16|HsX_11808  chromosome  X 25337980-25338048
                 AGTAAGG GC AGCT TAATA AGCT G TTCTG TCCATAC  CCTGA AAAT TTTGG TTTATAT CCTTT TTGTACT A
NT_011669.16|HsX_11826  chromosome  X   381115-381176
                 AGTAATG TC AGCC AAATA AGCT G TCAGG TTCATAC  CCCAA AAAT GTTGG TTTATAT CCCTT T

NT_011786.15|HsX_11943  chromosome  X 26733239-26733273
                 AGTAAGG CC AGCT AGAAA AGCT G ATATG GTTTGAC
NT_011786.15|HsX_11943  chromosome X  26733617-26733673
                               T ATATG ATCT A TTGGG CCCATAC CCTGA AAAC  GTTGG TTTATA TGTCTC CTGTACT A
NT_011896.9|HsY_12053   chromosome  Y  5590696-5590755
                   TAAGG TC AGCT AAATA AGCT A TCAGG CCCATAC ACTAA AAAT GTTGG TTATAT  CCTTC CC

                 
CRS              AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT A

...............
Pan troglodytes  agtaagg tc agct aaata agct a tcggg cccatac  cccga aaat gttgg ttacac  ccttc ccgtact a

NW_001238041.1 Pan troglodytes NUMT chromosome  7 15596-15529
                 AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTACAC  CCTTC CCGTACT A  

...............
Macaca Mulatta   agtaagg tc agct aaaca agct a tcggg cccatac  cccga aaat gttgg tcacat  ccttc ccgtact a

NW_001121215.1 Macaca NUMT chromosome  7 5669906-5669973
                 AGTAAGG TC AGCT AAACA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TCACAT  CCTTC CCGTACT A

NW_001116516.1 Macaca NUMT chromosome  4  1672039-1671972
                 AGTAAGG TC AGCT ACATA AGCT A TTGGA TCCATGC  TCCCA AAAT ATTGG TTATAC  CCTTC CCGTACT A

...............
Canis
NW_876285.1|Cfa28_WGA69_2:c8387305-8387236 Canis familiaris chromosome 28
                 AGTAAGA TC AGCT AAATTA AGCT A TTGGG CCCATAC TCTGA AAAT GTTGG TTTATAT CCTTC CCGTACT A

...............

Bos taurus       AGTAAGG TC AGCT AATTA AGCT A TCGGG CCCATAC  CCCGA... AAAT GTTGG TTTATAT CCTTC CCGTACT A

NW_001494660.1|Bt2_WGA308_3:c1338571-1338503    Bos taurus chromosome  2
                 AGTAAAG TC AACT GAATA AGCT A TTGGA CCCATAC  CTTGA... AAAT GTTGG TTTATAT CCTTC CTTTACC A
NW_001494863.1|Bt4_WGA511_3:c391257-391189      Bos taurus chromosome  4
                 AGTAAGG TC AGTT AATTA AGCT A TCAGG CCCATAC  CCCAA... AAGT GTTGG TTTATAT CCTTC TTGTACT A
NW_001494946.1|Bt4_WGA594_3:243572-243638       Bos taurus chromosome  4
                 AGGAAAG TC AGCT AAATG AGCC A TTAGG CCCATCC  CTA..... AAAT GTTGG TTTATAC CCTTC CTGTACT A
NW_001495027.1|Bt5_WGA675_3:c192819-192751      Bos taurus chromosome  5
                 AGTAAGG TC AGCT AACTA AGCT A TCAGG CCTGTAC  CTCGA... AAAT GTCGG TTCATGT CCTTC CCGTAAT A
NW_001495529.1|Bt9_WGA1177_3:c539918-539850     Bos taurus chromosome  9
                 AGTAAGG TC AGCT AATTA AGCT A TTGGG CCCATAC  ATGGA... AAAT GTTGG TTTATAT CCTTC CTGTACT A
NW_001492779.1|Bt10_WGA1287_3:158386-158454     Bos taurus chromosome 10
                 AGGAAGG TC AGCT AATTA AGCT A TCGGG CCCATAC  CCCAA... AAAT GTTGG TTCATAC CCTTC CCGTACT A
NW_001492818.1|Bt10_WGA1326_3:247334-247402     Bos taurus chromosome 10
                 AGTAATG TC AGCT AAATA AGCT A TCAAG CCCATTC  TCTGA... AAAT GTTAG TTTATAT CCTTC CTATACT A
NW_001492943.1|Bt11_WGA1451_3:700628-700699     Bos taurus chromosome 11
                 AGTAAGG TC AGCT AATTA AGCT A TCGGG CCCATAC  CCTGTCGA AAAT GTTGG TTTATAC TCTTC CTGTACT A
NW_001493101.1|Bt13_WGA1609_3:c186700-186632    Bos taurus chromosome 13
                 ACTAAGG TC AGCT GAATA AGCT A GTTGG TCCATAC  CCCAA... AAAT GTTGT TTTATAT CCTTC CCATTCT A
NW_001493101.1|Bt13_WGA1609_3:c189227-189159    Bos taurus chromosome 13
                 ACTAAGG TC AGCT GAATA AGCT A GTTGG TCCATAC  CCCAA... AAAT GTTGT TTTATAT CCTTC CCATTCT A
NW_001493926.1|Bt20_WGA2234_3:c397005-396937    Bos taurus chromosome 20
                 AGTAAGG TC AGCT AAATA AGCC A TCAGG CCCATGC  CCTGA... AAAT GTTTA TTAATAT CCTTC CCATAGT A
NW_001494121.1|Bt22_WGA2429_3:c869768-869705    Bos taurus chromosome 22
                 AGTAAGG TG AGCT ACCAG GCCC A ..... CCCATAC  CCTGA... AAAT GTTGG TTTATAT CCTTC CTGTACT A

...............


Human Mutations found in published genealogical sequences:-
CRS              AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT A
                 4402    4409    4415  4420   4425  4430     4437  4442 4446  4451    4457  4462    4469

A4402-
MK217265(Assyrian)
C4413T
FJ168737(Peru) 
A4417G
JX154049(Denmark)
T4418C
AY495125(Eur.)   AGTAAGG TC AGCT AAACA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT A    
4429R
JQ705992
4430Y
HQ336334
A4435G
NDsq0178(Japan)  AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATGC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT A
4440.1G
HQ012135(Mexican)
4444.1A
HQ012135(Mexican)
T4452C
AY339416(Eur.)   AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TCATAC  CCTTC CCGTACT A     
T4454A
AF346969(Biaka)  AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTAAAC  CCTTC CCGTACT A
T4454C
AY289097(Taiwan) AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTACAC  CCTTC CCGTACT A
4464A
KC911444(Iran)
A4469G
DQ246830(India)  AGTAAGG TC AGCT AAATA AGCT A TCGGG CCCATAC  CCCGA AAAT GTTGG TTATAC  CCTTC CCGTACT G


The mutations are present in these haplogroups:

T4413C       -    1 - D4h3a4
A4417G       -    1 - U4a2
T4418C       -   38 - H3g1(definer), I2, L2e. L3d1c1, M6, U4b
4429R        -    2 - H1c1, U5a1
4430Y        -    1 - H1c  
A4435G       -   29 - B2c1b(definer),B4b1a2, C1c3 D4a1a1 D5 H1ak2, H3j, H5, J1c1 J2a2a, M3c1b, M7a2, X2
4440.1G      -    1 - B2c2a
4444.1A      -    1 - B2c2a
T4452C       -   71 - H1f(definer), H7 L0 L3 M7
T4454A       -  136 - L1c1a(definer)
T4454C       -  182 - J1c2b(definer) A2 L1 M5 M7 U6
4464A        -   11 - H1c3, L0d2, L2a1p, T2a, U5a1a2b
4466G        -    5
A4469G       -    2 - M25





2008 & 2018