'tRNA-leu(UUR)' mutations and comparisons

The transfer RNA for leucine(UUR) (aka. MT-TL1) is one of the transfer RNA's of 'mitochondrial DNA'.
It is located at Bases 3230 - 3304. (All numbering is from CRS.)

                 3230            3243                     3263                      3285
Homo sapiens     GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
Deniso' FN673705 GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAATC AGAGG TTCAACT CCTCT TCTTAAC A
Pan paniscus     gttaaga tg gcag agcccggtaa  tcgc a taaaa cttaaaa cttta caatc agagg ttcaatt cctct tcttaac a
Pan troglodytes  gttaaga tg gcag agcccggtaa  ttgc a taaaa cttaaaa cttta caatc agagg ttcaatt cctct tcttgac a
Gorilla gorilla  gttaaga tg gcag agcccggtaa  tcgc a taaaa cttaaaa cttta tagtc agagg ttcaatt cctct tcttaac a
Pongo pygmaeus   gttaaga tg gcag agcccggtaa  ttgc a taaaa tttaaag cttta cagtc agagg ttcaact cctct tcttaac a
Pongo abelii     gttaaga tg gcag agcccggtaa  ctgc a taaaa tttaaag cttta cagtc agagg ttcaact cctct tcttaac a
Hylobates lar    gttaaga tg gcag agcccggcaa  ttgc a taaaa cttaaga cttta taatc agagg ttcaatc cctct tcttaac a
Macaca sylvanus  gttaaga tg gcag agcccggcaa  ttgc a taaaa cttaaaa cttta taatc agagg ttcaacc cctct tcttaac a
Macaca mulatta   gttaaga tg gcag agcccggtaa  ttgc a taaaa cttaaaa ctttg taacc agagg ttcaatt cctct tcttaac a
Papio hamadryas  gttaaga tg gcag agcccggtaa  ttgc a taaaa cttaaaa cttta caccc agagg ttcaacc cctct tcttaac a
Cercopithicus    gttaaga tg gcag agcccggcaa  ttgc a taaaa tttaaaa tttta aaacc agagg ttcaacc cctct tcttaac a
Colobus guereza  gttaaga tg gcag agcccggcaa  ttgc a taaaa cttaaaa cttta taatc agagg ttcgact cctct tcttaac a
Trachypithecus   gttaaga tg gcag agcccggcaa  ttgc a taaaa tttaaga cttta taatc agagg ttcaact cctct tcttaac a
Cebus albifrons  gttaaga tg gcag agcccggcaa  ttgc a taaaa cttaaaa cttta caatc agagg ttcaact cctct tcttaac a
Nycticebus       gttaaga tg gcag agcctggtaa  ttgc a taaaa cttaaaa cttta tactc agagg ttcaact cctct tcttaac a
Lemur catta      gttaagg tg gcag agcccggtaa  ttgc a taaaa cttaaga cttta aagtc agagg t.caact cctct ccctaac a
Tarsius          gttaaga tg gcag agcccggcaa  ttgc a taaaa cttaaaa cttta ttatc agagg ttcaact cctct tcttaac a
Tupaia           gttaagg tg gcag agcccggtca  ttgc c taaaa cttaaga tttta agtac agaag ttcaaat cctct ccttaac a
Cynocephalus     gttagga tg gcag agcccggtaa  ctgc a taaag cttaaga cttta caccc agagg ttcaact cctct tcctaac a
Lepus europeus   gttaagg tg gcag agcccggcaa  ttgc a taaaa cttaaaa cttta taatc agagg ttcaact cctct ccttaac a
Ventrifossa      attaaag tg gcag aactcggaca  ttgc a aaaga cctaaa  ccctt tttac agagg ctcaaat cctct ctttaat a
Gavia pacifica   gctagcg tg gcag agctcggtaa  atgc a aaagg cttaag  ccctt taccc agagg ttcaaat cctct ccctagc t
Cervus unicolor  gttaagg tg gcag agcccggtaa  ttgc g taaaa cttaaaa cttta tagtc agaga ttcaaat cctct ccttaac a
Canis famil.     gttaggg tg cagg gcccggtaa   ctgc g taaaa cttaaac cttta ctatc agagg ttcaatt cctct ccctaac a

Woolly rhino(13) gttagga tg gcag agcccggtaa  ttgc a taaaa cttaaac cttta taacc agagg ttcaact cctct tcctaac a :ac:
Black rhino (14) gttagga tg gcag agcccggcaa  ttgc a taaaa cttaaac cttta taacc agagg ttcaact cctct tcctaac a :ac:
Javan rhino (15) gttagga tg gcag agcccggtaa  ctgc a taaaa cttaaac cttta taacc agagg ttcaact cctct tcctaac a :ac:
Sumatran rh (16) gttagga tg gcag agcccggtaa  ttgc a taaaa cttaaac cttta taacc agagg ttcaact cctct tcctaac a :ac:
Indian rhino (X) gttagga tg gcag agcccggtaa  ctgc a taaaa cttaaac cttta taacc agagg ttcaact cctct tcctaac a :at:
White rhino  (Y) gttagga tg gcag agcc.ggaaa  ttgc a taaaa cttaaac cttta taatc agagg ttcaact cctct tcctaac a :ac:
Equus            gttaggg tg gcag agcc cggaaa ttgc a taaaa cttaaac cttta cactc agagg ttcaact cctct ccctaac a :ac:
Tapirus          gttaaga tg gcag agcc tggtaa ctgc g taaaa cttaaac cttta tcatc agagg ttcaatt cctct tcttaac a :ac:
Hippopotamus     gttgcga tg gcag agcc cggtaa ttgc a taaaa cttaaac cttta cacc  agagg ttcaaat cctct tcacaac a :aa:

...................
Human NUMT sequences:-

Homo sapiens     GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A

NT_004836.17|Hs1_4993   chromosome  1  2864819-2864745
                 GTTAAGA TG GCAG AGCCCAGCAA  TTGC A TAAAA CTTAAAA CTTTA CAATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_032977.8|Hs1_33153   chromosome  1 17261867-17261937
                 GTTAAGG TG ACAG AGC-TGGTAA  TTGT G TAGAA CTTAGAC ..TTA TAATC AGAGG TGCAAC. TCTTC TGCTTAA C
NT_022135.15|Hs2_22291  chromosome  2  6489339-6489413
                 GTTAAGA TG GCAG AGCCCAGCAA  TTGC A TAAAT CTTAAAA CTTTA TAATC AGAGG TTCGACT CCTCT TCTTAAC A
NT_022135.15|Hs2_22291   chromosome 2 29687047-29686973
                 GCTAAGA TG GCAG AGCCCGGCAA  TTGC A TAAAA CTTAAAA CTTTA TAATC TGAGG TTCAACT CCTCT TAACATA C
NT_016354.18|Hs4_16510  chromosome  4 18171138-18171213
                 GTTAAGG TG GCAG AAGCCCGGTAA TTGC A TAAAA TGTAAAA CTTTA TAATC AGAGG TTCAATG AATCT TCTTAAC A
NT_016354.18|Hs4_16510  chromosome  4 80933199-80933125
                 GTTAAGA TG GCAG AGCCTGGTAA  TTGC A TAAAA CTTAAAA TTTTA TAATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_025741.14|Hs6_25897  chromosome  6 60973548-60973474
                 GTTAAGA CG GCAG AGCCCGGCAA  TTGC G TAAAA TTTACAA CTTTA TGGGC AGAGG TTCAATT CCTCT TCTTAAC A
NT_007914.14|Hs7_8071   chromosome  7  2096391-2096321
                 GTTAAGA TG GCAG AGCCCGGCAA  TTGC A TAAAA CTTAAAA CTTTA TAACT GGAGG TTCAACT CCTCT TCTT
NT_008046.15|Hs8_8203   chromosome  8 17315981-17316050
                 ATTAAGA TG GCAG AGCCCAGTTA  TTGC A TAAAA CTTAAAA CTTTA CAATC A...G CTCAACT CCT.. TCTTAAC A  
NT_007995.14|Hs8_8152   chromosome  8 3192303-3192370 chromosome  8
                 CTTAAGA TG GCAG AGGCCGGAAA  TTGC A TAAAA ....... CTTTA TAATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_023678.15|Hs8_23834  chromosome  8 901225-901151
                 GTTAAGA TG GCAT AGCCCAGCAA  TTGC A TAAAA CTTAAGA CTTTA TAATT AGAAG TTCAACA CCTCT TCTTAAC A
NT_008413.17|Hs9_8570   chromosome  9  5084023-5084097
                 CTTAAGA TG GCGG AGCCTGGCAA  TAGC A TAAAA CGTAAAA CTTTA CAATC AAAGG TTCAACT CCCCT TCTTAAC A
NT_008705.15|Hs10_8862  chromosome 10  2011766-2011692
                 GTTAAGA TG GCAG AGCCCAGCAA  TTGC A TAAAA CCTAAAA CTTTA TAATC AGAAT TTCAACT CCTCT TCTTAAC A
NT_008705.15|Hs10_8862  chromosome 10 19865697-19865625
                 GTTAAGA TG GCAG AGCCCAGCAA  TTGC A TAAAT CTTAAAA CTTTG TAATC AGA.G TTGAACT CCTCT TCTTAAC
NT_033899.7|Hs11_34054  chromosome 11  6841590-6841523
                  TTAAGA TG GTAG AGCCCGGTAA  TTGC A TAAAA CTTTATA ..... .AATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_026437.11|Hs14_26604 chromosome 14 65638853-65638927
                 GTTAAGA TG ACAG AGCCTGGCAA  TTGC G TAAAA CTTAAAA CTTTA TAATC AGAGG TTCAACT TCTGC TCTTAAC A
NT_037887.4|Hs16_37891  chromosome 16  3360982-3360909
                  TTAAGA TG GCAG ACCCCGGCAA  TTAC C TAAGA CTTAAAA CTTTA AAATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_010718.15|Hs17_10875 chromosome 17  19102369-19102413
                 GTTAAGA TG GCAG AGCCCAGCAA  TTGC A TAAAA CTTAAAA CTTTA
NT_010718.15|Hs17_10875 chromosome 17  19102743-19102785
                                                       AA CTTAAAA CTT.A TAATC AGAGG TTCAACT CCTCT TCTTAAC A  
NT_024862.13|Hs17_25018 chromosome 17    340903-340977
                 GTTAAGA TG GCAG ACCCCAGCAA  TTGC A TAAAA TTTAAAA CTTTA CAACC AGAGG TTCAACC CCTCT TCTTAAC A
NT_011362.9|Hs20_11519  chromosome 20  20986410-20986336
                 GTTAAGA TG GCAG AGCCCAGCGA  TTGC A TAAAA CTTAACA CTTTA TAATC AGAGG TTCAACT CCTCT TCTTAAC A
NT_011630.14|HsX_11787  chromosome  X   2761915-2761841 
                 GTTAAGA TG GCAG AGCCCGGCAA  TTGC A TAAGA CTTAAAA CTTTA TAATC AGAGG TTCAACT CCTCT CATTAAC A 
NT_011651.16|HsX_11808  chromosome  X  25324437-25324507
                 GTTAAGA TG GTAG AGCCTGGTAA  TTGC A TAAAA CTTGAAA TTTTA TAATC AGAGG TTCAATT ACTCT TCTT
NT_011669.16|HsX_11826  chromosome  X   379928-379967 
                                                            TAAAA CTTTA TAATC AGAGG TTAAATC CCTCT TCTTAAC A
NT_011786.15|HsX_11943  chromosome  X 26732107-26732174
                 GTTAAGA TT GCAG AGCCCAGCAG  TTGC A TAAAA CTTAAAA CTGCA TAATC AGAGG TTCAATT CCTCT T
NT_011896.9|HsY_12053   chromosome  Y  5590108-5590181        
                 GTTAAGA TG GCAG AACCTGGCAG  TTTC A TAAAA CTTAAAG .TTTA TAATC AGAGG TTCAACT CCTCT TCTTAAC A

CRS              GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A

................

Pan troglodytes  gttaaga tg gcag agcccggtaa  ttgc a taaaa cttaaaa cttta caatc agagg ttcaatt cctct tcttgac a

NW_001231261.1 Pan troglodytes NUMT chromosome 2a 13140552-13140626
                 GTTAAGA TG GCAG AGCCCGGTAA  TTGC A TAAAA CTTAAAA CTTTA CAATC AGAGG TTCAATT CCTCT TCTTGAC A  
................

Macaca mulatta   gttaaga tg gcag agcccggtaa  ttgc a taaaa cttaaaa ctttg taacc agagg ttcaatt cctct tcttaac a

NW_001109259.1 Macaca NUMT chromosome  1  8939215-8939289
                 GTTAAGA TG ACAG AGTCCGGCAA  TTGC A TAAAA CTTAAAA CTTTA CAATC AGAGG TTCAACT CCTTT TCTTAAC A
NW_001118162.1 Macaca NUMT chromosome  5  6375892-6375818
                 GTTAAGA TG GAGG AGCTTGGTAA  TTGC A TAAAA CTTAAAA TTTTA TAATA AGAGG TTCAACT CCTCT TCTTAAC A
NW_001120954.1 Macaca NUMT chromosome  6     1263-1189
                 GTTAAGA TG GCAG AGCCCGGTAA  TTGC A TAAAA CTTAAAA CTTTA TAACC AGAGG TTCAACT CCTCT TCTTAAC A

................

Monodelphis

NW_001581835.1|Mdm1_WGA10_2  54557696-54557771 Monodelphis domestica chromosome  1
                 ATTAAGG TG GCAG AGCAGGTAA CTGC A TATAG AACTTAAGT CTTTA TAATC GGGGG TTCAAGC CCTCT CTTTAAT A
NW_001581892.1|Mdm2_WGA58_2    646643-646570   Monodelphis domestica chromosome  2
                 ATTAAGG TG GCAG AGCAGGTAA   TTGC A TAAAA CTTAAGC CTTTA TTATC AGAGG TTCAACC CCTCT CCTTAAT A
NW_001581976.1|Mdm6_WGA142_2 22805375-22805307 Monodelphis domestica chromosome  6
                 ATTAAGT TG GCAG AGTAGATAA   TTGC A TAAAA .....GC GATTA TAATC AGAGG TTCAAAC CCTCT CCTTAAT A

................

Bos taurus       GTTAAGG TG GCAG AGCCCGGTAA  TTGC A TAAAA CTTAAAC TTTTA TATCC AGAGA TTCAAAT CCTCT CCTTAAC  A

NW_001494553.1|Bt2_WGA201_3:c842993-842919     Bos taurus chromosome  2
                 GTTGGAA TG GCAG AGACCAGTAA  CTGC A TGAAA CTTAAAC CTTTA TTACC AGAAG GTCTATT CTTCT CCCTAAC  A
NW_001494946.1|Bt4_WGA594_3:242063-242129      Bos taurus chromosome  4
                 GTTAAGG TG GCAG AACCCAGAAA  TTGT A TAAAA CTTAAAG C.... ....C AGAGA TTCAAAT CTTCT CCCTAAC  A
NW_001492818.1|Bt10_WGA1326_3:245084-245158    Bos taurus chromosome 10
                 ATTAAAG TG ACAG AATACAGTAA  TTGT G TAAAA TTTAACC CTTTA TAACC AGAAG TTCAAAT CCTTT CCCTAAC  A
NW_001492828.1|Bt10_WGA1336_3:c1377774-1377700 Bos taurus chromosome 10
                 CAAAATG TG ACAA AGTTGGGTAA  TTGC A TAAAA CTTAAAT CTTTA TAACC AGAGG TTCAAAT CCTCT TCTTAAC  A
NW_001492943.1|Bt11_WGA1451_3:699276-699350    Bos taurus chromosome 11
                 ATTAAGG TG AGAG AGACTGGTAA  CTGT G TAAAA CTTAAAC CTTTA TAACC AGAGA TTCAAAT CCTCT CCTTGAC  A
NW_001492951.1|Bt11_WGA1459_3:33428-33501      Bos taurus chromosome 11
                 CTTAAGG TG GGAG AGCCCGGTAA  TTGT G TAAAA TTTAAAC CTTTT TG.CC AGATG TTCAATT CTTCT TAATAGC  A
NW_001493203.1|Bt14_WGA1711_3:c282109-282035   Bos taurus chromosome 14
                 GTTAGGG TG GCAG AGACCAGTAA  TTGC A TGAAA CTTAAAT CTTTA TTACC AGAAG GTCAATT ATTCT CCCTAAC  A
NW_001493101.1|Bt13_WGA1609_3:c192823-192749   Bos taurus chromosome 13
                 GTTAGAG CA GCAC AGCTGGGTAA  CTGC A CAAAG TTTAAAC CTTTA TAGCC AGAGG TTCAAAT CCTCT CCCTAAC  A
NW_001493530.1|Bt17_WGA2038_3:44140-44214      Bos taurus chromosome 17
                 GTTAGGG AG ATAT AACCCA      CTAT G TAAAA CTTAAAC CTTTA TTGCC AGAGG TTCAGTT CTTCT TCTTAAC  A
NW_001494078.1|Bt22_WGA2386_3:c375715-375640   Bos taurus chromosome 22
                 GTTAGGG TG ACAG AGCCCTGTAA  TTTC A TAAAA CTTAAAC TTTTA TAATC AGAGG TTGCACT CCTCT CCCTTAAT A
NW_001494121.1|Bt22_WGA2429_3:c871167-871097   Bos taurus chromosome 22
                 GTTAAGG TG AC.. AGGGCTTAA   TTGC A TAAAA TTTAAAC TTTTA TAACT AGAAG TTCAAAT CCTCT AA.CAAA  A
NW_001494243.1|Bt24_WGA2551_3:c333623-333579   Bos taurus chromosome 24
                 GTTAAGG TG GCAG AATCTGGTAA  TTGC A TAAAA CTTAAAC CTTTG
NW_001494273.1|Bt24_WGA2581_3:c209996-209922   Bos taurus chromosome 24
                 GTTAAGG TG GCAG AGCCCGGTAA  TTGC G TAAAA CTTAAAC CTTTA TAATC AGAAA TTCAAAT CCTCT CCTTAAC  A
NW_001494370.1|Bt26_WGA2678_3:c921115-921041   Bos taurus chromosome 26
                 GTTAAGG TA GCAA AGCCTGGTAA  TTGT G TAACA CTTAAAA CTTTC TATTC AGAGG GGCAATC CTTCT TAACAAT  A

................

Neandertal       GTTAAGA TG GCAG AGCCCGG
(19282_3077_3666/1-78)
  
Human Mutations found in published genealogical sequences:-
CRS              GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
                 3230            3243                     3263                      3285    3292  3297    3304

A3233T
KY670899(Russia)
A3236G
KY670838
G3242C
EF184633(Gonder) GTTAAGA TG GCAC AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
A3243G
DQ862536         GTTAAGA TG GCAG GGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
G3244A
DQ200805(Jordan) GTTAAGA TG GCAG AACCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
T3253C
DQ112702(Domin.) GTTAAGA TG GCAG AGCCCGGTAA  CCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
C3254T
KF161216(Denmark)GTTAAGA TG GCAG AGCCCGGTAA  TTGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
C3254A
DQ112708(Domin.) GTTAAGA TG GCAG AGCCCGGTAA  TAGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
A3261G
EU443475(Kumar)  GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAGA CTTAAAA CTTTA CAGTC AGAGG TTCAATT CCTCT TCTTAAC A
C3275T
EF060315(Egypt)  GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA TAGTC AGAGG TTCAATT CCTCT TCTTAAC A
C3275A
EU872032(India)  GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA AAGTC AGAGG TTCAATT CCTCT TCTTAAC A
G3277A
mtDNA351(Euro.)  GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAATC AGAGG TTCAATT CCTCT TCTTAAC A 
T3278C
DQ137401(PNG)    GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGCC AGAGG TTCAATT CCTCT TCTTAAC A
T3290C
AY738942(Italy)  GTTAAGA TG GCAG AGCCCGGTAA  TCGC A TAAAA CTTAAAA CTTTA CAGTC AGAGG TTCAACT CCTCT TCTTAAC A 

Haplogroups:

A3233T -				- (  1)
A3236G -				- (  2)
G3238R -				- (  1)
G3242C - 				- (  1)
A3243G - 				- (  9)
A3243R -				- (  1)
G3244A - 				- (  6)
T3253C - 				- (  6)
C3254T -				- ( 15)
C3254A - L2d(definer)			- ( 24)
A3261G -				- (  6)
A3261R -				- (  1)
C3275T -				- (  2)
C3275A - 				- (  1)
G3277A - L3e2b1a2(definer)		- ( 30)
T3278C -				- ( 13)
T3290C - A11b, F4a, U9a1(definer)	- (112)





2018