'mtDNA'

Haplogroup M5.

Click link to see tree diagram for this haplogroup.
Haplogroup M5 tree

The groups around the M* are mainly East Asian groups.

The sequences for the M5 haplogroup are:

 1. Kong          A40.JS      AY255172(Chinese)

 2. Kivisild      (2)A50.JS   DQ112875(Asia)     CODING AREA ONLY

 3. Sun           A7.JS       AY922259
 4. Sun           A8.JS       AY922260
 5. Sun           A21.JS      AY922273
 6. Sun           A29.JS      AY922281
 7. Sun           A30.JS      AY922282
 8. Sun           A33.JS      AY922285
 9. Sun           A37.JS      AY922289
10. Sun           A40.JS      AY922292

11. Rajkumar      A4.JS       DQ246814(India)
12. Rajkumar      A22.JS      DQ246832(India)

13. Thangaraj                 DQ408675.2(Gadaba)

14. Malyarchuk    A2.JS       EF583176(Russia)

15. Hartmann2     A28.JS      EU597563(Brahui, Pakistan HGDP00005)

16. Behar2008     A48.JS      EF556195

17. Fornarino                 FJ770949(India)       M5a1 10-AUG-2009
18. Fornarino                 FJ770955(Nepal)       M5a  10-AUG-2009
 
The sequences has these differences from the CRS:

- for the main stem leading from H:

A73G     A263G     A750G    A1438G   A2706G   A4769G   C7028T   A8701G
A8860G   T9540C    A10398G  T10873C  G11719A  C12705T  C14766T  G15301A
A15326G  C16223T

- and for the M* branch:

T489C   C10400T   T14783C   G15043A

- and for  M5

G1888A   G16129A  T16519C

- and ignoring changes at 309 & 315.


the mutation list is:

 1. Kong          A40.JS      AY255172(Chinese)
T125C    T127C    C522.    A523.    A633G    C4170T   C5288T   T5492C   T5580C
T5814C   T11353C  A12030G  A12358G  G12372A  G14569A  T14727C  C14774T  A15010G
T15344C  T16172C  C16234T  C16290T  T16311C

 2. Kivisild      (2)A50.JS   DQ112875(Asia)
G709A    C3921T   A4916G   G8697A   G9064A   G11016A  T12477C  G14323A  T15287C

 3. Sun           A7.JS       AY922259
G709A    C3921T   T4454C   C8930A   C11986T  T12477C  G14323A

 4. Sun           A8.JS       AY922260
G709A    C3921T   T4454C   C8930A   C11986T  T12477C  G14323A

 5. Sun           A21.JS      AY922273
G709A    A3399G   C3921T   T4454C   A6905G   G7226A   T12477C  G14323A  T15262C
T16144A  C16148T

 6. Sun           A29.JS      AY922281
T146C    C150T    T333C    523.C    523.A    C575T    A3144G   G3483A   C4851T
A5319G   G5417A   T6413C   A9632G   G13708A

 7. Sun           A30.JS      AY922282
T146C    C150T    T333C    523.C    523.A    C575T    A3144G   G3483A   C4851T
A5319G   G5417A   T6413C   A9632G   G13708A

 8. Sun           A33.JS      AY922285
G709A    C3921T   T4454C   C8676T   G8886A   C10334T  T12477C  G14323A  T15262C
C16264T  A16265C  G16319A  C16365T

 9. Sun           A37.JS      AY922289
G185A    T334C    G709A    T1780C   C3921T   A4916G   G9064A   G11016A  T12477C
G14323A  G15172A  T15287C  C16291T

10. Sun           A40.JS      AY922292
C522.    A523.    A1763G   A3744G   G6260A   T8005C   C8281.   C8282.   C8283.
C8284.   C8285.   T8286.   C8287.   T8288.   A8289.   G8572A   A8784T   A10906G
G13368A  G16048A  A16302G  G16390A

11. Rajkumar      A4.JS       DQ246814(India)
T152C    A699G    G709A    C958T    C3921T   A5675T   C7082T   C8164T   G9305A
C10986A  T12477C  G14323A

12. Rajkumar      A22.JS      DQ246832(India)
A4575G   A5268G   A6806G   A8518G   T9824C   C10986A  G13368A  A15752G  G16048A 

13. Thangaraj     DQ408675.2(Gadaba)                M5a
A189G    G709A    G3407A   C3921T   T11365C  T12477C  G12501A  G14323A  A14509G 

14. Malyarchuk    A2.JS       EF583176(Russia)      M5a1b
523.C    523.A    G709A    G1303A   C3921T   C3954T   A4916G   A6461G   T9833C 
T12477C  G14323A  T15287C  C16291T  T16298C 

15. Hartmann2     A28.JS      EU597563(Brahui, Pakistan HGDP00005)
T199C    G709A    C3921T   T4454C   G4991A   A8158G   G10685A  T12477C  G14323A 
T15262C 

16. Behar2008     A48.JS      EF556195  (16129)
G709A    C3921T   T4373C   G10589A  T12477C  T12681C  T13617C  G14323A  C16257T 

17. Fornarino                 FJ770949(India)       M5a1 10-AUG-2009
G709A    C3921T   T4454C   A7358G   G8886A   A9456G   T12477C  G14323A  T15262C 
G15731A 

18. Fornarino                 FJ770955(Nepal)       M5a 10-AUG-2009
T146C    G709A    C3757T   T3826C   C3921T   C5450A   C7669T   A7975G   T10604C 
T13020C  T13215C  G14323A  T16093C  T16311C  

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2009