Sequences submitted to 'GenBank' are revised for a number of reasons.
Each revision uses the original Accession Number with a revision number appended, e.g. .2,.3, etc.
JF742196.2(Nepal) Wang_H Haplogroup R8a1a1a 24-JAN-2013 and 6 others Corrected sequences
JF742196.1(Nepal) Wang_H Haplogroup R8a1a1a 31-MAR-2012
AY882385.2(Yemen) Achilli-Rengo Haplogroup U3b1a 11-JAN-2013 Corrected sequence
AY882385.1(Yemen) Achilli-Rengo Haplogroup U3b1a 15-APR-2005
JX266265.2 Mielnik-Sikorska Haplogroup L2a1l2a1 27-AUG-2012 Extra bytes removed
JX266265.1 Mielnik-Sikorska Haplogroup L2a1l2a1 20-AUG-2012
JX266266.2 Mielnik-Sikorska Haplogroup G2a 27-AUG-2012 Extra bytes removed
JX266266.1 Mielnik-Sikorska Haplogroup G2a 20-AUG-2012
JX266267.2 Mielnik-Sikorska Haplogroup A 27-AUG-2012 Extra bytes removed
JX266267.1 Mielnik-Sikorska Haplogroup A 20-AUG-2012
GQ214520.2(New Zealand) Haplogroup U5a2a 08-AUG-2012 and 7 others Corrected sequences submitted
GQ214520.1(New Zealand) Haplogroup U5a2a 07-JUN-2010
AY275527.2 Cabrera Haplogroup U6b 18-JUL-2012
AY275527.1 Cabrera Haplogroup U6b 20-OCT-2003 and 5 others Corrected sequences submitted
GQ398480.2(Ecuador) Cardoso A2 16-MAR-2012 Extra mutation removed
GQ398480.1(Ecuador) Cardoso A2 01-DEC-2009 and 10 others
JQ611709.2 FTDNA Haplogroup U8a 13-FEB-2012 Corrected sequence submitted
JQ611709.1 FTDNA Haplogroup U8a 12-FEB-2012
HQ593807.3(Italian) Zaragoza 08-NOV-2011 Extra bytes removed
HQ593807.2(Italian) Zaragoza 13-JAN-2011
HQ593810.3(Italian) Zaragoza 08-NOV-2011 Extra bytes removed
HQ593810.2(Italian) Zaragoza 13-JAN-2011
HQ840646.2(Scottish) FTDNA T2b 24-JAN-2011 Corrected sequence submitted
HQ840646.1(Scottish) FTDNA T2b 09-JAN-2011
HQ593808.2(Italian) Zaragoza 13-JAN-2011 and 5 others Corrected sequences submitted
HQ593808.1(Italian) Zaragoza 09-JAN-2011
HM575425.2(Sweden) FTDNA K1a10 14-JUL-2010 Corrected sequence submitted
HM575425.1(Sweden) FTDNA K1a10 05-JUL-2010
HM130562.2(German) FTDNA Haplogroup U5b2a2b1 25-OCT-2010 Mutations were missed
HM130562.1(German) FTDNA Haplogroup U5b2 04-MAY-2010
GU990521.3 FTDNA Haplogroup U9 20-APR-2010 Now correct
GU990521.2 FTDNA Haplogroup U9 12-APR-2010 Mutation corrected, but fresh error added
GU990521.1 FTDNA Haplogroup U9 20-MAR-2010
GU004259.2 FTDNA Haplogroup T2a1a 09-FEB-2010 '524.1C' error corrected
GU004259.1 FTDNA Haplogroup T2a1a 24-OCT-2009
GQ983100.2 Santoro H5 13-OCT-2010 Sequence revised
GQ983100.1 Santoro H5 28-SEP-2010
GQ983072.2 Santoro H5 13-OCT-2010 Sequence revised
GQ983072.1 Santoro H5 28-SEP-2010
GQ214521.2(Fiji) Corser Q2a 02-SEP-2010 'G16569-' mutation introduced
GQ214521.1(Fiji) Corser Q2a 07-JUN-2010
GQ214522.2(Fiji) Corser Q2a 02-SEP-2010 New mutations added
GQ214522.1(Fiji) Corser Q2a 07 JUN-2010
GQ214523.2(Kiribati) Corser B4a1a1a1 02-SEP-2010 Spurious mutations removed
GQ214523.1(Kiribati) Corser B4a1a1a1 07-JUN-2010
GQ214526.2(New Guinea) Corser Q2 02-SEP-2010 Spurious mutations removed
GQ214526.1(New Guinea) Corser Q2 07-JUN-2010
GQ200592.2 FTDNA Haplogroup U4a3 16-FEB-2010 '524.1C' error corrected
GQ200592.1 FTDNA Haplogroup U4a3 03-JUN-2009
GQ129176.2 Pala Haplogroup U5b3e 23-JUN-2009 Revised sequence (minor)
GQ129176.1 Pala Haplogroup U5b3e 17-JUN-2009 '3107n'
FJ968772.2 Zhao Haplogroup M9 20-NOV-2009 and 3 others Extra base at '16570' removed
FJ968772.1 Zhao Haplogroup M9 16-NOV-2009
FJ770972.2(Nepal) Fornarino Haplogroup M3c1a 20-AUG-2009 Correction made, but sequence incomplete
FJ770972.1(Nepal) Fornarino Haplogroup M3c1a 10-AUG-2009
FJ770948.2(India) Fornarino Haplogroup M53 20-AUG-2009 Assembly error corrected
FJ770948.1(India) Fornarino Haplogroup M53 10-AUG-2009
FJ878777.2 FTDNA Haplogroup T1b 10-APR-2009 Mutation corrected
FJ878777.1 FTDNA Haplogroup T1b 08-APR-2010
FJ544236.2 Zhao Haplogroup M9 20-NOV-2009 Revised sequence (minor)
FJ544236.1 Zhao Haplogroup M9 16-NOV-2009 '3106-7' 'CC' error
FJ527772.2 Alvarez Haplogroup H2a5 12-JUN-2009 and 7 others Revised sequences (minor)
FJ527772.1 Alvarez Haplogroup H2a5 20-APR-2009 '3106-7' 'CC' error
FJ467993.2(India) Thangaraj2009 Haplogroup R8 18-SEP-2009 Missing Mutation added
FJ467993.1(India) Thangaraj2009 Haplogroup R8 30-AUG-2009
FJ467952.2(India) Thangaraj2009 Haplogroup R8 18-SEP-2009 Missing Mutation added
FJ467952.1(India) Thangaraj2009 Haplogroup R8 30-AUG-2009
FJ460547.2(Tunisia) Costa Haplogroup HV1 12-JAN-2010 Missing mutation added
FJ460547.1(Tunisia) Costa Haplogroup HV1 31-DEC-2008
FJ449703.2 FTDNA Haplogroup W6 04-FEB-2010 '524.1C' error corrected
FJ449703.1 FTDNA Haplogroup W6 26-NOV-2008
FJ445408.2 FTDNA Haplogroup J2b 05-MAR-2009 Submission error (minor)
FJ445408.1 FTDNA Haplogroup J2b 18-NOV-2008 'Data entry error'
FJ441666.2(France) FTDNA Haplogroup X2b 01-JUN-2009 Submission error (minor)
FJ441666.1(France) FTDNA Haplogroup X2b 18-NOV-2008 'Data entry error'
FJ004829.2(Ori74) Chaubey Haplogroup R5a2b2 17-SEP-2008 Revised sequence (major)
FJ004829.1(Ori74) Chaubey Haplogroup R5a2b2 24-AUG-2008 'Confusion over sequence'
EU872029.2(India) Bhat Haplogroup U2 18-FEB-2009 and 3 others Record now withdrawn
EU872029.1(India) Bhat Haplogroup U2 30-SEP-2008 'Contamination'
EU744541.2 FTDNA Haplogroup H* 14-JUL-2008 Submission error (minor)
EU744541.1 FTDNA Haplogroup H* 03-JUN-2008 'Data entry error'
EU725607.2(Inuit) Gilbert Haplogroup A2 22-JAN-2009 and 14 others ........ Revised sequences (minor)
EU725607.1(Inuit) Gilbert Haplogroup A2 30-MAY-2008
EU719115.2 FTDNA Haplogroup H2a2b1 10-FEB-2010 '524.1C' error corrected
EU719115.1 FTDNA Haplogroup H2a2b1 21-MAY-2008
EU682506.2 FTDNA Haplogroup U5b2 30-SEP-2010 '524.1C' error corrected
EU682506.1 FTDNA Haplogroup U5b2 13-MAY-2008
EU682394.2 FTDNA Haplogroup T2b 10-FEB-2010 '524.1C' error corrected
EU682394.1 FTDNA Haplogroup T2b 13-MAY-2008
EU677750.2 FTDNA Haplogroup H5 09-FEB-2010 '524.1C' error corrected
EU677750.1 FTDNA Haplogroup H5 04-MAY-2008
EU573192.2 FTDNA Haplogroup T2a1a 09-FEB-2010 '524.1C' error corrected
EU573192.1 FTDNA Haplogroup T2a1a 06-APR-2008
EU547188.2(Poland) FTDNA Haplogroup L2a1 18-MAR-2008 Submission error (minor)
EU547188.1(Poland) FTDNA Haplogroup L2a1 16-MAR-2008 'Data entry error'
EU545451.3(Russia) Grzybowski Haplogroup U4a1a 19-OCT-2010 and 9 others Revised sequences
EU545451.2(Russia) Grzybowski Haplogroup U4a1a 14-OCT-2010
EU545451.1(Russia) Grzybowski Haplogroup U4a1a 22-JUL-2008
EU545415.2(Belarus) Grzybowski Haplogroup U4b1a 14-OCT-2010 and 25 others Revised sequences
EU545415.1(Belarus) Grzybowski Haplogroup U4b1a 22-JUL-2008
EU482374.2(Tubalar) Volodko Haplogroup A 28-NOV-2008 Revised sequence (major)
EU482374.1(Tubalar) Volodko Haplogroup A 14-MAY-2008
EU445683.2(Italy)Brisighelli Haplogroup U7a2a 12-JUN-2009 and 8 others Revised sequences (minor)
EU445683.1(Italy)Brisighelli Haplogroup U7a2a 31-JAN-2009 '3106-7' 'CC' error
EU443605.2 FTDNA Haplogroup H2a2b1 30-NOV-2009 Heteroplasmy A73R added
EU443605.1 FTDNA Haplogroup H2a2b1 20-FEB-2008
EU431080.2(USA) Achilli Haplogroup A2 01-AUG-2008 Revised sequence (major)
EU431080.1(USA) Achilli Haplogroup A2 18-MAR-2008
EU156036.2 FTDNA Haplogroup H10 05-FEB-2010 '524.1C' error corrected
EU156036.1 FTDNA Haplogroup H10 24-SEP-2007
EU130575.2 FTDNA Haplogroup H2a2 17-SEP-2007 Revised sequence
EU130575.1 FTDNA Haplogroup H2a2 12-SEP-2007
EU095548.2(Waunana) Tamm Haplogroup B2 20-MAR-2008 Revised sequence (minor)
EU095548.1(Waunana) Tamm Haplogroup B2 10-SEP-2007
EU095545.2(Kogui) Tamm Haplogroup A2 20-MAR-2008 Revised sequence (minor)
EU095545.1(Kogui) Tamm Haplogroup A2 10-SEP-2007
EU095535.2(Coreguaje) Tamm Haplogroup B2 20-MAR-2008 Revised sequence (minor)
EU095535.1(Coreguaje) Tamm Haplogroup B2 10-SEP-2007
EF452295.2 FTDNA Haplogroup U4b2a 03-FEB-2010 '524.1C' error corrected
EF452295.1 FTDNA Haplogroup U4b2a 05-MAR-2007
EF397754.2 FTDNA Haplogroup U5a2d 30-NOV-2009 Heteroplasmy G8155R added
EF397754.1 FTDNA Haplogroup U5a2d 14-FEB-2007
EF222024.1 FTDNA 27 JAN 2007 Withdwawn - a duplicate
EF061150.2(PNG) Friedlaender Haplogroup E1b 31-AUG-2009 Changed to 3106n
EF061150.1(PNG) Friedlaender Haplogroup E1b 28-FEB-2007
EF060364.2 La Morgia Haplogroup U4a 20-AUG-2009 Extra part removed
EF060364.1 La Morgia Haplogroup U4a 31-OCT-2007
DQ830736.2 FTDNA Haplogroup K1c2 18-AUG-2008 Revised sequence (minor)
DQ830736.1 FTDNA Haplogroup K1c2 08-JUL-2006
DQ408672.2(Karnataka) Thangaraj Haplogroup M34 25-APR-2006 and 8 others .. Revised sequences
DQ408672.1(Karnataka) Thangaraj Haplogroup M34 07-MAR-2006
DQ404440.3(Australia) Pellekaan Haplogroup S1 27-SEP-2006 and 7 others ... Revised sequences
DQ404440.1(Australia) Pellekaan Haplogroup S1 10-APR-2006
DQ358973.2 Detjen Haplogroup J1c1 06-MAR-2006 and 4 others ............... Revised sequences
DQ358973.1 Detjen Haplogroup J1c1 24-JAN-2006
DQ341068.2(Ethiopia) Torroni Haplogroup L3i 05-MAY-2009 Revised sequence
DQ341068.1(Ethiopia) Torroni Haplogroup L3i 23-JUN-2006
DQ112686.2(Dominican Rep) Kivisild Haplogroup L0 18-OCT-2006 and 276 others Revised sequences
DQ112686.1(Dominican Rep) Kivisild Haplogroup L0 11-JUL-2005
AY963586.3(Italy) Bandelt Haplogroup I3a 29-JUN-2009 Revised sequence
AY963586.1(Italy) Bandelt Haplogroup I3a 16-JUN-2005
AY963573.2(China) Macaulay Haplogroup D4 20-SEP-2005 and 12 others ........ Revised sequences
AY963573.1(China) Macaulay Haplogroup D4 18-MAY-2005
AY956413.2(PNG) Friedlaender Haplogroup Q2b 31-AUG-2009 Spurious mutation deleted
AY956413.1(PNG) Friedlaender Haplogroup Q2b 18-MAY-2005
AY950289.2(Andaman) Kumarsamy Haplogroup F1 23-MAY-2005 and 10 others ..... Revised sequences
AY950289.1(Andaman) Kumarsamy Haplogroup F1 20-MAY-2005
AY882391.2(Pakistan) Achilli-Rengo Haplogroup U7a 20-AUG-2009 Mutation added
AY882391.1(Pakistan) Achilli-Rengo Haplogroup U7a 15-APR-2005
AY615360.2(Tofalar) Starikovskaya Haplogroup C 02-JUN-2005 Revised sequence
AY615360.1(Tofalar) Starikovskaya Haplogroup C 01-JUN-2004
AY519484.2(Buriat) Starikovskaya Haplogroup B 02-JUN-2005 and 12 others ... Revised sequences
AY519484.1(Buriat) Starikovskaya Haplogroup B 17-JAN-2004
AY495105.2(European) Coble Haplogroup H7 07-JAN-2008 and 6 others ........ Revised sequences
AY495105.1(European) Coble Haplogroup H7 06-FEB-2004
AY339409.2(Finland) Moilanen Haplogroup H13 10-OCT-2007 and 61 others ..... Revised sequences
AY339409.1(Finland) Moilanen Haplogroup H13 31-AUG-2003
AY255134.2(Chinese) Kong Haplogroup D4j 04-OCT-2006 Revised sequence
AY255134.1(Chinese) Kong Haplogroup D4j 17-JUL-2003
AY195745.2(Caucasian) Mishmar Haplogroup T2b 10-JUN-2004 and 34 others .... Revised sequences
AY195745.1(Caucasian) Mishmar Haplogroup T2b 09-APR-2003
AM260602.2 Annunen-Rasila Haplogroup H13 08-AUG-2006 Revised sequence (minor)
AM260602.1 Annunen-Rasila Haplogroup H13 01-AUG-2006
AF381984.2(Morocco) Maca-Meyer Haplogroup M1 19-JUN-2006 and 4 others .... Revised sequences
AF381984.1(Morocco) Maca-Meyer Haplogroup M1 28-DEC-2001
OTHER PROBLEMS:
A) LENGTH MISTAKES:
The following sequences all have length mistakes:
AP008336 TCsq0077(Japanese) Tanaka Haplogroup M7 16-JUL-2005
- Sequence is 1 base too long. "g"
AP008866 JDsq0048(Japanese) Tanaka Haplogroup D 16-JUL-2005
Sequence 8 bases too long. "GATCACAG"
DQ523681(Sardinia) Fraumene Haplogroup H1 03-OCT-2006
Sequence is one base too short.
EF060364 La Morgia Haplogroup U4a 31-OCT-2007 CORRECTED 20-AUG-2009
- Sequence is 51 bases too long. "gatcacaggt ctatcaccct attaaccact cacgggagct ctccatgcat t"
EF556162 Behar2008 Haplogroup H* 22-APR-2008
- Sequence is one base too long. "g"
EU742151 Feder Haplogroup N1b2 22-JUN-2008
Sequence is 4 bases too long. "GATC"
GQ895152 Qin Haplogroup A4 30-MAR-2010
Sequence is 10 bases too short.
FJ748746 Ji Haplogroup .. 01-JUL-2010
Sequence is 1 base too short.
HQ593807.2(Italian) Zaragoza 13-JAN-2011 Corrected 08-NOV-2011
HQ593810.2(Italian) Zaragoza 13-JAN-2011
Have many extra bases
B) DUPLICATED SEQUENCES
The following sequences have been duplicated by 'Hartmann',
having been previously published by 'Kivisild'.
DQ112773.2(Brazil) Kivisild Haplogroup D1 18-OCT-2006
EU597510(Karitiana, Brazil HGDP01000) Hartmann Haplogroup D1 06-APR-2008
DQ112952.2(Asia) Kivisild Haplogroup M2 18-OCT-2006
EU597516(Sindhi, Pakistan Hartmann HGDP00167) Haplogroup M2 06-APR-2008
DQ112784.2(Asia) Kivisild Haplogroup M* 18-OCT-2006
EU597554(Cambodia HGDP00714) Hartmann Haplogroup M 06-APR-2008
DQ112765.3(Pakistan) Kivisild Haplogroup U9 18-OCT-2006
EU597540(Pathan, Pakistan HGDP00214) Hartmann Haplogroup U9b 06-APR-2008
DQ112790.2(America) Kivisild Haplogroup B 18-OCT-2006
EU597569(Colombia HGDP00709) Hartmann Haplogroup B 06-APR-2008
DQ112791.2(America) Kivisild Haplogroup B 18-OCT-2006
EU597580(Colombia HGDP00710) Hartmann Haplogroup B 06-APR-2008
DQ112885.2(Oceania) Kivisild Haplogroup Q1 18-OCT-2006
DQ112886.2(Oceania) Kivisild Haplogroup Q1 18-OCT-2006
DQ112887.2(Oceania) Kivisild Haplogroup Q1 18-OCT-2006
EU597543(Melanesia HGDP00789) Hartmann Haplogroup Q1 06-APR-2008
C) PROTEIN LENGTH DIFFERENCES
The mtDNA has 13 genes for producing proteins:
name coding area length amino acids comment
NAD1 3307-4260 854 318 codons + 'T' at 4261 Stops with 'TAA'
NAD2 4470-5510 1041 347 codons + 'T' at 5511 Stops with 'TAG'
COX1 5904-7442 1539 513 codons + 'AGA' Stops with 'AGA' 7443-7445
COX2 7586-8266 681 227 codons + 'T' at 8267 Stops with 'TAG', 1.5% 'TAA'
ATP8 8366-8569 204 68 codons + 'T' at 8570 Stops with 'TAG', ATP6 from 8527 onwards
ATP6 8527-9204 678 226 codons + 'T' at 9205
COX3 9207-9989 783 261 codons + 'T' at 9990
NAD3 10059-10403 345 115 codons + 'T' at 10404
NAD4L 10470-10763 294 98 codons + 'T' at 10764
NAD4 10760-12136 1377 459 codons + 'T' at 12137
NAD5 12337-14145 1809 603 codons + 'T' at 14146 98.5% TAA, 1.5% TAG
NAD6 14673-14152 522 174 codons + 'T' at 14151 Reversed & complemented
CYTB 14747-15886 1140 380 codons + 'T' at 15887
Code letters for amino acids:
A - Alanine (Ala) C - Cysteine (Cys) D - Aspartic Acid (Asp) E - Glutamic Acid (Glu)
F - Phenylalanine (Phe) G - Glycine (Gly) H - Histidine (His) I - Isoleucine (Ile)
K - Lysine (Lys) L - Leucine (Leu) M - Methionine (Met) N - Asparagine (Asn)
P - Proline (Pro) Q - Glutamine (Gln) R - Arginine (Arg) S - Serine (Ser)
T - Threonine (Thr) V - Valine (Val) W - Tryptophan (Trp) Y - Tyrosine (Tyr)
Each protein should conform to the expected pattern of codons.
However, there are a number of GenBank sequences that give different
protein lengths - most of these are because of sequencing errors,
but some changes are physiological.
The mutations and GenBank sequences with protein length differences are:
Mutations Gene Genbank sequence Author Error or Physiological
--------- ---- ---------------- ------ ----------------------
3307.1 NAD1 EU431080.2(USA) Achilli Physiological
GQ377757(Canada) FTDNA "
T3308C NAD1 69 sequences
e.g. AF346986(Ibo) Ingman Physiological
3312.1 NAD1 EF657310 mtDNA170(Asia) Herrnstadt Error
3571.1 NAD1 EF660993(Italy) Gasparre Error
4511.1 NAD2 EU443512 Kumar Error
5436- NAD2 JF742208 Wang_h Error
5436.1 NAD2 DQ246818 Rajkumar Error
6077insGTC COX1 FJ625852 Cerny Physiological ?
G6322- COX1 EU443478 Kumar Error
G7444A COX1 AF347006(Saami) V7 Ingman Physiological ?
AM260606-AM260612 V7 Annunen-Rasila
AP009431(Japan) D4e2c Kazuno
AP010714(Japan) D4e2 Rabadan
AP010747(Japan) M7a1a1a Rabadan
AY339446-AY339450 V7 Moilanen
AY922286 M Sun
DQ112737.2 L1b Kivisild
DQ112936.2(Europe) V7 Kivisild
DQ282408(Hispanic) A2 Parsons
DQ282507(Hispanic) L3e Parsons
EF184618-EF184619 L2a Gonder
EF657747(Europe) H Hernnstadt
EF657594(Europe) H3 Herrnstadt
EU092805(L456) L3f Behar
EU092893(L554) L1b Behar
EU567454(Russia) V7 Malyarchuk
FJ348217/FJ348223 W Irene
FJ467943(India) R8a Thangaraj2009
A7445C EU482325(Yukaghir) D4j Volodko Pathological ?
A7445G EU571946(Hungary) U4b1a3 Maasz Pathological ?
8495.1A GQ214523(Kiribati) B4a1a1a1 Corser Error
A8508-
C8488- ATP8 EF184640(Tanzania) Gonder Error
8527.1A ATP8/ATP6 EU443477 Kumar Physiological
T9205C ATP6 EU431081 Achilli Physiological
EU600328 Shlush "
T9959- COX3 EU443476 Kumar Error
A10116- NAD3 EF660930(Italy) Gasparre Error
T10117- " " " "
T10390- " KC622235(Khoisan) Barbieri Physiological(?)
T10404- NAD3 EF184634(Tanzania) Gonder Error
A11038- NAD4 EF660995(Italy) Gasparre Error
C11085- NAD4 EF660994(Italy) Gasparre Error
A11086- " " " "
A11376- NAD4 EU443512 Kumar Error
T12338C NAD5 GQ999958 All F2 Yu Physiological
12617.1 NAD5 EU443497 Kumar Error
13235.1 NAD5 EF660996(Italy) Gasparre Error
14189.1 NAD6 FJ383217 Rao Error
15719.1 CYTB EU443443 Kumar Error
" & EU443444 Kumar Error
A15788- " EF184610(S. Africa) Gonder Error
C15789- " " " "
C15790- " " " "
A15791- " " " "
T15792- " " " "
Discussion:
3307.1 EU431080.2(USA) Achilli, GQ377757(Canada) FTDNA
NAD1 mutation - gene starts at Codon 3.
This has the same result at the more common mutation T3308C
- GenBank gives this translation:
MANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTK
EPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSI
LWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWL
LLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNII
MMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLW
KNFLPLTLALLMWYVSMPITISSIPPQT
And normal CRS is: (All CRS sequences from NC_012920)
MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTK
EPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSI
LWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWL
LLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNII
MMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLW
KNFLPLTLALLMWYVSMPITISSIPPQT
......
T3308C AF346986(Ibo) Ingman
NAD1
Gene starts at codon 3:
GenBank gives this translation:
TPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTK
EPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSI
LWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWL
LLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNII
MMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLW
KNFLPLTLALLMWYVSMPITISSIPPQT
And normal CRS is:
MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTK
EPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSI
LWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLSTLITTQEHLWL
LLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNII
MMNTLTTTIFLGTTYDALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLW
KNFLPLTLALLMWYVSMPITISSIPPQT
......
3312.1 EF657310 mtDNA170(Asia)
NAD1 - erroneous at codon 3.
GenBank does not give a translation.
......
3571.1 EF660993(Italy) Gasparre
NAD1 - erroneous at codon 89.
GenBank does not give a translation.
......
4511.1 EU443512 Kumar
NAD2 - Erroneous at codon 14.
- GenBank gives this translation:
MPWPNPSSTLPSFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL
But CRS is:
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL
......
5436- JF742208 Wang_h
NAD2 - erroneous at codon 323
- GenBank gives this translation:
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPPHSSPHSSPLPRYSYLSPLLY
But CRS is:
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL
.....
5436.1 DQ246818 Rajkumar
NAD2 - erroneous at codon 323.
- GenBank gives this translation:
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTFSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPSPIPPHTHRPYHATPTYLPFYTNNLM
EI
But CRS is:
MNPLAQPVIYSTIFAGTLITALSSHWFFTWVGLEMNMLAFIPVLTKKMNPRSTEAAIK
YFLTQATASMILLMAILFNNMLSGQWTMTNTTNQYSSLMIMMAMAMKLGMAPFHFWVP
EVTQGTPLTSGLLLLTWQKLAPISIMYQISPSLNVSLLLTLSILSIMAGSWGGLNQTQ
LRKILAYSSITHMGWMMAVLPYNPNMTILNLTIYIILTTTAFLLLNLNSSTTTLLLSR
TWNKLTWLTPLIPSTLLSLGGLPPLTGFLPKWAIIEEFTKNNSLIIPTIMATITLLNL
YFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTLIALTTLLLPISPFMLMIL
.......
6077.1 'GTC' FJ625852 Cerny
COX1 - insertion after codon 58
- GenBank gives this translation:
MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVV
TAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASA
MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP
AMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQ
HLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAH
HMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLF
TVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLD
QTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTA
VMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
BUT CRS is:
MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIV
TAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASA
MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP
AMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQ
HLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAH
HMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLF
TVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLD
QTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTA
VMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
.......
G6322- EU443478 Kumar
COX1 - erroneous at 140th. codon
GenBank does not give a translation.
.......
G7444A AF347006(Saami)
COX1 - altered STOP from 'AGA' to 'AAA'
- GenBank gives this translation:
MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIV
TAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASA
MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP
AMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQ
HLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAH
HMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLF
TVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLD
QTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTA
VMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKSKQK
.......
A7445C EU482325(Yukaghir)
COX1 - altered STOP from 'AGA' to 'AAC'
- GenBank gives this translation:
MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIV
TAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASA
MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP
AMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQ
HLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAH
HMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLF
TVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLD
QTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTA
VMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKSSQK
.......
A7445G EU571946(Hungary)
COX1 - altered STOP from 'AGA' to 'AAG'
- GenBank gives this translation:
MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIV
TAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASA
MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPP
AMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQ
HLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAH
HMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLF
TVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLD
QTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTA
VMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFEEPVYMKS
.......
8495.1A A8508- GQ214523(Kiribati)
ATP8 - erroneous 5- amino acid block
- GenBank gives this translation:
MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKNKKLYKPWEPKWTKI
CSLHSLPPQS
which has the stretch (NKKLY): ASN-LYS-LYS-LEU-TYR
whilst the CRS has (MKNYN): MET-LYS-ASN-TYR-ASN
.......
C8488- EF184640(Tanzania) Gonder
ATP8 - erroneous at 41st. codon
GenBank does not give a translation.
.......
8527.1A EU443477 affects ATP8 & ATP6.
'8527' is 54th codon of ATP8 and 1st.of ATP6
GenBank has ATP8 as:
MPQLNTTVWPAMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKSYNKPWEPKMNEN
LFASFIAPTIL
ATP6 is unaffected:
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMM
AMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMG
FRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLI
GSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
But CRS is:
ATP8
MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKNYNKPWEPKWTKI
CSLHSLPPQS
and
ATP6
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMM
TMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMG
FRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLI
GSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
.......
T9205C EU431081 Achilli & EU600328 Shlush
GenBank has ATP6 as:
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMM
TMHNTKGRTWSLMLVSLIIFIATTNLLGLLPYSFTPTTQLSMNLAMAIPLWAGAVIMG
FRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLI
GSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNTQWPTNH
MPIM
But CRS is:
MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMM
TMHNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMG
FRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLI
GSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT
.......
T9959- EU443476 Kumar
COX3 - erroneous at 251st codon.
- last 10 amino acids are changed.
GenBank gives this translation.
MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWW
RDVTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHW
PPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFT
LLQASEYFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHH
FGFEAAAWYWHFVDVVWLFCMSPSIDE
But CRS is:
MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWW
RDVTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHW
PPTGITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFT
LLQASEYFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHH
FGFEAAAWYWHFVDVVWLFLYVSIYWWGS
.......
A10116- EF660930(Italy) Gasparre
T10117- EF660930(Italy) Gasparre
NAD3 - erroneous at 20th. codon.
GenBank does not give a translation.
......
T10390- KC622235(Khoisan)Barbieri
- GenBank gives this translation:
MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPM
SPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMV
MSSLLLIIILALSLAX
(premature 'TAG' STOP)
T10404- EF184634(Tanzania) Gonder
NAD3 - erroneous at terminal codon.
- GenBank gives this translation:
MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPM
SPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMV
MSSLLLIIILALSLAYEWLQKGLDWAE
But CRS is:
MNFALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPM
SPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMV
MSSLLLIIILALSLAYEWLQKGLDWTE
......
A11038- EF660995(Italy) Gasparre
NAD4 - erroneous at 93rd. codon.
GenBank does not give a translation.
......
C11085- EF660994(Italy) Gasparre
A11086- EF660994(Italy) Gasparre
NAD4 - erroneous at 109th. codon.
GenBank does not give a translation.
......
A11376- EU443512 Kumar
NAD4 - erroneous at 206th. codon.
GenBank does not give a translation.
......
T12338C - GQ999958 Yu
NAD5 - error in 1st codon.
Leads to peptide being 2 codons shorter as
it starts a codon '3'
Possibly a LHON mutation !
GenBank gives this translation:
MHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTFII
SLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSMMFIPVALFVTWSIMEFS
LWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIMSFLLISWWYARA
DANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALLNANPSLTPLLGLLLAA
AGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLAENSPLIQTLTL
CLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFK
AMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMPFLTGFYSKDH
IIETANMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNINENNPTLLN
PIKRLTAGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLTNK
LKMKSPLCTFYFSNMLGFYPTITHRTIPYLGLLTSQNLPLLLLDLAWLEKLLPKTISQ
HQISTSIITSTQKGMIKLYFLSFFFPLILTLLLIT
CRS starts:
MTMHTTMTTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTF ...
.......
12617.1 EU443497 Kumar
NAD5 - erroneous at codon 94
GenBank does not give a translation
..........
13235.1 EF660996(Italy) Gasparre
NAD5 - erroneous at codon 300
GenBank does not give a translation.
.........
14189.1 FJ383217 Rao
NAD6 - erroneous at codon 162
- GenBank gives this translation:
MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIIL
NFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEV
LVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNSVGSWMIYEGEGS
GLIREDPIGAGALYDYGRWLVVVTGWTLFVWCMYCNWDCSGE
But CRS is:
MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIIL
NFGGGYMGLMVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEV
LVSVLVGLAMEVGLVLWVKEYDGVVVVVNFNSVGSWMIYEGEGS
GLIREDPIGAGALYDYGRWLVVVTGWTLFVGVYIVIEIARGN
.........
15719.1 EU443443 & EU443444 Kumar
CYTB - erroneous at codon 325
GenBank does not offer a translation
......
A15788- EF184610(S. Africa) Gonder
C15789- EF184610(S. Africa) Gonder
C15790- EF184610(S. Africa) Gonder
A15791- EF184610(S. Africa) Gonder
T15792- EF184610(S. Africa) Gonder
CYTB - erroneous at 348th. codon.
GenBank does not give a translation.
................